| Entity | Number of Couplings |
|---|---|
| Savu/savu/core/transports/hdf5_transport.py | 774 |
| Savu/savu/data/transport_data/hdf5_transport_data.py | 735 |
| Savu/savu/core/plugin_runner.py | 586 |
| Savu/savu/plugins/plugin.py | 567 |
| Savu/savu/data/experiment_collection.py | 553 |
| Savu/savu/plugins/reconstructions/base_recon.py | 538 |
| Savu/savu/data/plugin_list.py | 447 |
| Savu/savu/plugins/utils.py | 433 |
| Savu/savu/plugins/loaders/mapping_loaders/p2r_fly_scan_detector_loader.py | 353 |
| Savu/savu/plugins/corrections/timeseries_field_corrections.py | 316 |
| Savu/savu/data/data_structures/plugin_data.py | 314 |
| Savu/savu/plugins/fluo_fitters/base_fluo_fitter.py | 276 |
| Savu/savu/plugins/corrections/base_correction.py | 275 |
| Savu/savu/data/meta_data.py | 265 |
| Savu/savu/data/data_structures/data.py | 260 |
| Savu/savu/data/data_structures/data_create.py | 248 |
| Savu/savu/test/travis/framework_tests/plugin_runner_test.py | 245 |
| Savu/savu/plugins/reconstructions/astra_recons/base_astra_recon.py | 245 |
| Savu/savu/plugins/loaders/mapping_loaders/base_multi_modal_loader.py | 243 |
| Savu/savu/data/data_structures/preview.py | 243 |
| Savu/savu/plugins/loaders/mapping_loaders/nxxrd_loader.py | 241 |
| Savu/savu/plugins/azimuthal_integrators/base_azimuthal_integrator.py | 237 |
| Savu/savu/plugins/corrections/monitor_correction.py | 236 |
| Savu/savu/core/transports/base_transport.py | 227 |
| Savu/savu/plugins/loaders/mapping_loaders/nxmonitor_loader.py | 215 |
| Savu/savu/plugins/driver/cpu_plugin.py | 211 |
| Savu/savu/plugins/savers/base_saver.py | 207 |
| Savu/savu/tomo_recon.py | 203 |
| Savu/savu/plugins/driver/gpu_plugin.py | 203 |
| Savu/savu/plugins/fitters/base_fitter.py | 202 |
| Savu/savu/plugins/filters/strip_background.py | 199 |
| Savu/scripts/config_generator/savu_config.py | 198 |
| Savu/savu/plugins/loaders/mapping_loaders/mm_loader.py | 197 |
| Savu/savu/plugins/analysis/stats.py | 197 |
| Savu/savu/plugins/loaders/base_loader.py | 195 |
| Savu/savu/data/chunking.py | 191 |
| Savu/savu/plugins/ring_removal/raven_filter.py | 185 |
| Savu/savu/plugins/ptychography/base_ptycho.py | 182 |
| Savu/savu/plugins/loaders/mapping_loaders/nxstxm_loader.py | 181 |
| Savu/savu/plugins/filters/poly_background_estimator.py | 180 |
| Savu/savu/plugins/plugin_datasets.py | 179 |
| Savu/savu/plugins/loaders/mapping_loaders/nxfluo_loader.py | 175 |
| Savu/savu/plugins/reconstructions/astra_recons/astra_recon_gpu.py | 173 |
| Savu/savu/test/travis/plugin_tests/reconstruction_tests/astra_recon_cpu_test.py | 171 |
| Savu/savu/plugins/loaders/full_field_loaders/image_loader.py | 169 |
| Savu/savu/plugins/filters/spectrum_crop.py | 166 |
| Savu/savu/plugins/filters/base_filter.py | 164 |
| Savu/savu/test/jenkins/plugin_tests/reconstruction_tests/CGLS_astra_test.py | 161 |
| Savu/savu/test/jenkins/plugin_tests/reconstruction_tests/astra_recon_gpu_test.py | 159 |
| Savu/savu/plugins/filters/dezinger_simple.py | 156 |
| Savu/savu/plugins/driver/plugin_driver.py | 153 |
| Savu/savu/test/travis/plugin_tests/filter_tests/distortion_correction_test.py | 152 |
| Savu/savu/test/travis/framework_tests/multiple_parameter_process_lists_test.py | 152 |
| Savu/savu/test/travis/plugin_tests/reconstruction_tests/simple_tomo_test.py | 150 |
| Savu/savu/plugins/reconstructions/scikitimage_filter_back_projection.py | 150 |
| Savu/savu/test/travis/process_list_tests/scikit_image_recon_test.py | 149 |
| Savu/savu/test/travis/plugin_tests/filter_tests/downsample_filter_test.py | 149 |
| Savu/savu/__init__.py | 149 |
| Savu/savu/test/travis/process_list_tests/tomo_pipeline_preview_test.py | 148 |
| Savu/savu/test/travis/plugin_tests/filter_tests/band_pass_test.py | 148 |
| Savu/savu/test/travis/plugin_tests/filter_tests/histogram_test.py | 146 |
| Savu/savu/plugins/fluo_fitters/simple_fit_xrf.py | 146 |
| Savu/savu/plugins/filters/dials_find_spots.py | 146 |
| Savu/savu/test/travis/plugin_tests/filter_tests/find_peaks_test.py | 145 |
| Savu/savu/test/travis/plugin_tests/filter_tests/raven_filter_test.py | 144 |
| Savu/savu/test/travis/plugin_tests/filter_tests/median_filter_test.py | 144 |
| Savu/savu/test/travis/plugin_tests/filter_tests/monitor_correction_test.py | 143 |
| Savu/savu/test/travis/process_list_tests/mapping_3Dto4D.py | 142 |
| Savu/savu/test/travis/plugin_tests/filter_tests/dezinger_test.py | 142 |
| Savu/savu/test/travis/process_list_tests/stats_test.py | 141 |
| Savu/savu/plugins/filters/paganin_filter.py | 141 |
| Savu/savu/test/travis/process_list_tests/spectrum_crop_test.py | 139 |
| Savu/doc/source/conf.py | 137 |
| Savu/savu/test/travis/plugin_tests/reconstruction_tests/plugin_sart_test.py | 136 |
| Savu/savu/test/travis/plugin_tests/filter_tests/paganin_test.py | 136 |
| Savu/savu/plugins/corrections/dark_flat_field_correction.py | 135 |
| Savu/savu/test/test_utils.py | 133 |
| Savu/savu/test/travis/plugin_tests/filter_tests/sinogram_alignment_test.py | 132 |
| Savu/savu/plugins/reconstructions/astra_recons/astra_recon_cpu.py | 130 |
| Savu/savu/test/travis/framework_tests/plugins_util_test.py | 129 |
| Savu/savu/test/travis/plugin_tests/filter_tests/background_estimator_test.py | 127 |
| Savu/savu/data/data_structures/data_add_ons.py | 126 |
| Savu/savu/test/travis/plugin_tests/filter_tests/denoise_bregman_test.py | 124 |
| Savu/savu/plugins/filters/pymca.py | 122 |
| Savu/savu/plugins/filters/denoise_bregman_filter.py | 115 |
| Savu/savu/test/travis/framework_tests/multiple_parameter_test.py | 113 |
| Savu/savu/plugins/azimuthal_integrators/pyfai_azimuthal_integrator_with_bragg_filter.py | 111 |
| Savu/savu/plugins/reconstructions/scikitimage_sart.py | 110 |
| Savu/savu/test/travis/framework_tests/multiple_datasets_test.py | 109 |
| Savu/savu/plugins/fitters/simple_fit.py | 107 |
| Savu/savu/plugins/azimuthal_integrators/pyfai_azimuthal_integrator.py | 107 |
| Savu/savu/test/travis/plugin_tests/loader_tests/nx_tomo_loader_test.py | 106 |
| Savu/savu/plugins/absorption_corrections/mc_near_absorption_correction.py | 103 |
| Savu/savu/test/travis/framework_tests/data_test.py | 102 |
| Savu/savu/data/data_structures/utils.py | 102 |
| Savu/savu/test/travis/framework_tests/chunking_test.py | 101 |
| Savu/savu/plugins/loaders/mapping_loaders/nxptycho_loader.py | 101 |
| Savu/savu/plugins/component_analysis/ica.py | 101 |
| Savu/savu/plugins/alignment/sinogram_alignment.py | 101 |
| Savu/savu/plugins/reconstructions/simple_recon.py | 98 |
| Savu/savu/data/data_structures/data_types/data_plus_darks_and_flats.py | 98 |
| Savu/savu/plugins/reshape/data_removal.py | 97 |
| Savu/savu/plugins/fitters/reproduce_fit.py | 96 |
| Savu/savu/test/travis/plugin_tests/loader_tests/nx_fluo_loader_test.py | 95 |
| Savu/savu/plugins/filters/find_peaks.py | 94 |
| Savu/savu/test/travis/plugin_tests/loader_tests/nx_xrd_loader_test.py | 93 |
| Savu/savu/test/travis/plugin_tests/loader_tests/nx_stxm_loader_test.py | 93 |
| Savu/savu/test/travis/plugin_tests/loader_tests/nx_monitor_loader_test.py | 93 |
| Savu/savu/test/travis/plugin_tests/loader_tests/nx_mm_loader_test.py | 93 |
| Savu/savu/test/travis/framework_tests/cgls_library_test.py | 89 |
| Savu/savu/plugins/ptychography/dummy_ptycho.py | 89 |
| Savu/savu/plugins/centering/vo_centering.py | 87 |
| Savu/savu/plugins/corrections/time_based_correction.py | 85 |
| Savu/savu/plugins/filters/threshold_filter.py | 84 |
| Savu/savu/plugins/filters/band_pass.py | 83 |
| Savu/savu/test/travis/process_list_tests/mm_test.py | 81 |
| Savu/savu/plugins/analysis/histogram.py | 80 |
| Savu/savu/plugins/fitters/ral_fit.py | 79 |
| Savu/savu/core/utils.py | 78 |
| Savu/savu/test/travis/framework_tests/plugin_coverage_test.py | 77 |
| Savu/savu/plugins/developing/testing_sino_align.py | 75 |
| Savu/savu/plugins/component_analysis/base_component_analysis.py | 75 |
| Savu/savu/plugins/savers/utils/hdf5_utils.py | 73 |
| Savu/savu/data/transport_data/base_transport_data.py | 73 |
| Savu/savu/test/jenkins/process_list_tests/stxm_tomo_test.py | 72 |
| Savu/savu/test/travis/plugin_tests/loader_tests/__init__.py | 71 |
| Savu/savu/plugins/reshape/downsample_filter.py | 70 |
| Savu/savu/test/travis/plugin_tests/basic_operations_test.py | 68 |
| Savu/savu/plugins/ring_removal/ccpi_ring_artefact_filter.py | 65 |
| Savu/savu/plugins/filters/list_to_projections.py | 65 |
| Savu/savu/plugins/absorption_corrections/base_absorption_correction.py | 64 |
| Savu/c_source_code/distortion/unwarp_functions.cpp | 61 |
| Savu/c_source_code/distortion/timestamp.c | 61 |
| Savu/savu/plugins/filters/median_filter.py | 60 |
| Savu/savu/data/data_structures/data_notes.py | 60 |
| Savu/c_source_code/dezing/timestamp.c | 60 |
| Savu/savu/plugins/basic_operations/no_process_plugin.py | 59 |
| Savu/savu/test/travis/plugin_tests/filter_tests/simple_fit_test.py | 58 |
| Savu/c_source_code/dezing/dezing_functions.c | 58 |
| Savu/setup.py | 57 |
| Savu/savu/test/travis/process_list_tests/__init__.py | 56 |
| Savu/savu/test/travis/plugin_tests/reconstruction_tests/__init__.py | 56 |
| Savu/savu/test/travis/plugin_tests/loader_tests/i22_tomo_loader_test.py | 56 |
| Savu/savu/test/travis/plugin_tests/filter_tests/__init__.py | 56 |
| Savu/savu/test/travis/plugin_tests/__init__.py | 56 |
| Savu/savu/test/travis/framework_tests/__init__.py | 56 |
| Savu/savu/test/jenkins/process_list_tests/i18_xrd_pipeline_test.py | 56 |
| Savu/savu/data/data_structures/data_types/image_data.py | 56 |
| Savu/scripts/config_generator/content.py | 55 |
| Savu/savu/plugins/loaders/multi_savu_loader.py | 54 |
| Savu/savu/test/travis/__init__.py | 53 |
| Savu/savu/plugins/loaders/mapping_loaders/txm_loader.py | 53 |
| Savu/doc/create_autosummary.py | 53 |
| Savu/savu/plugins/fluo_fitters/fastxrf_fitting.py | 52 |
| Savu/savu/test/jenkins/plugin_tests/loader_tests/i13_fluo_loader_test.py | 51 |
| Savu/savu/plugins/reconstructions/tomopy_recon.py | 51 |
| Savu/savu/plugins/alignment/projection_shift.py | 50 |
| Savu/savu/data/data_structures/data_types/mrc.py | 50 |
| Savu/savu/test/jenkins/process_list_tests/simple_stxm_tomo_single_sino_test.py | 49 |
| Savu/savu/plugins/azimuthal_integrators/pyfai_azimuthal_integrator_separate.py | 49 |
| Savu/savu/test/travis/framework_tests/test_utils.py | 48 |
| Savu/savu/test/jenkins/process_list_tests/new_fit_test.py | 48 |
| Savu/savu/test/jenkins/process_list_tests/i18_xrf_pipeline_test.py | 48 |
| Savu/savu/plugins/loaders/savu_nexus_loader.py | 48 |
| Savu/scripts/config_generator/arg_parsers.py | 47 |
| Savu/savu/test/travis/plugin_tests/loader_tests/i22_tomo_test.py | 46 |
| Savu/savu/plugins/loaders/full_field_loaders/nxtomo_loader.py | 46 |
| Savu/savu/plugins/loaders/full_field_loaders/mrc_loader.py | 46 |
| Savu/savu/plugins/ring_removal/ring_removal_waveletfft.py | 45 |
| Savu/savu/plugins/analysis/base_analysis.py | 45 |
| Savu/savu/plugins/loaders/mapping_loaders/i13_loaders/i13_ptycho_loader.py | 44 |
| Savu/savu/data/data_structures/data_types/replicate.py | 44 |
| Savu/savu/core/transport_setup.py | 43 |
| Savu/c_source_code/distortion/unwarp_h5.py | 43 |
| Savu/c_source_code/distortion/tifwrite.c | 43 |
| Savu/c_source_code/distortion/tifffile.py | 43 |
| Savu/c_source_code/distortion/testmain.cpp | 43 |
| Savu/c_source_code/distortion/test_u.py | 43 |
| Savu/c_source_code/distortion/test_f.py | 43 |
| Savu/c_source_code/distortion/setupint16.py | 43 |
| Savu/c_source_code/distortion/setupfloat.py | 43 |
| Savu/c_source_code/distortion/findroot.c | 43 |
| Savu/c_source_code/distortion/Makefile | 43 |
| Savu/savu/plugins/loaders/mapping_loaders/i18_loaders/i18_xrd_loader.py | 42 |
| Savu/c_source_code/dezing/Makefile | 42 |
| Savu/savu/plugins/basic_operations/basic_operations.py | 41 |
| Savu/savu/plugins/driver/multi_threaded_plugin.py | 40 |
| Savu/savu/plugins/__init__.py | 40 |
| Savu/savu/data/data_structures/data_types/map_3dto4d_h5.py | 40 |
| Savu/doc/source/files_and_images/median_filter_test.py | 40 |
| Savu/doc/source/files_and_images/example_test_with_process_list.py | 40 |
| Savu/doc/source/files_and_images/example_test.py | 40 |
| Savu/c_source_code/dezing/tifwrite.c | 40 |
| Savu/c_source_code/dezing/setup.py | 40 |
| Savu/scripts/config_generator/config_utils.py | 39 |
| Savu/savu/plugins/savers/tiff_saver.py | 39 |
| Savu/savu/plugins/loaders/mapping_loaders/i18_loaders/base_i18_multi_modal_loader.py | 39 |
| Savu/savu/plugins/filters/quantisation_filter.py | 39 |
| Savu/savu/plugins/alignment/sinogram_clean.py | 38 |
| Savu/savu/plugins/alignment/projection_vertical_alignment.py | 38 |
| Savu/savu/plugins/loaders/mapping_loaders/i13_loaders/i13_fluo_loader.py | 37 |
| Savu/savu/plugins/ptychography/ptypy_compact.py | 36 |
| Savu/savu/data/transport_data/slice_lists.py | 36 |
| Savu/savu/data/data_structures/data_types/stitch_data.py | 36 |
| Savu/savu/data/data_structures/data_types/base_type.py | 36 |
| Savu/savu/plugins/component_analysis/pca.py | 35 |
| Savu/savu/plugins/loaders/mapping_loaders/i18_loaders/i18_fluo_loader.py | 34 |
| Savu/savu/plugins/corrections/time_based_plus_drift_correction.py | 34 |
| Savu/savu/core/transports/basic_transport.py | 32 |
| Savu/savu/core/basic_plugin_runner.py | 32 |
| Savu/scripts/config_generator/display_formatter.py | 30 |
| Savu/savu/plugins/loaders/mapping_loaders/i18_loaders/i18_stxm_loader.py | 30 |
| Savu/savu/plugins/loaders/mapping_loaders/i18_loaders/i18_monitor_loader.py | 30 |
| Savu/savu/plugins/loaders/mapping_loaders/i18_loaders/i18_mm_loader.py | 30 |
| Savu/c_source_code/dezing/tifffile.py | 30 |
| Savu/c_source_code/dezing/test_pymain.py | 30 |
| Savu/c_source_code/dezing/test_main.c | 30 |
| Savu/c_source_code/dezing/handlers.c | 30 |
| Savu/c_source_code/dezing/dezing_main.c | 30 |
| Savu/savu/test/base_checkpoint_test.py | 28 |
| Savu/savu/test/travis/framework_tests/checkpoint_test.py | 27 |
| Savu/savu/plugins/savers/hdf5_saver.py | 27 |
| Savu/savu/plugins/driver/basic_driver.py | 27 |
| Savu/savu/data/transport_data/basic_transport_data.py | 26 |
| Savu/scripts/log_evaluation/GraphicalThreadProfiler.py | 25 |
| Savu/savu/plugins/loaders/mapping_loaders/i13_loaders/i13_stxm_xrf_loader.py | 25 |
| Savu/savu/plugins/loaders/mapping_loaders/i13_loaders/i13_stxm_monitor_loader.py | 25 |
| Savu/savu/plugins/reconstructions/astra_recons/__init__.py | 23 |
| Savu/savu/core/checkpointing.py | 23 |
| Savu/install/__init__.py | 23 |
| Savu/scripts/config_generator/completer.py | 22 |
| Savu/savu/test/travis/plugin_tests/loader_tests/i18_xrd_loader_test.py | 21 |
| Savu/install/2_0_install/savu_v2.0/savu_master/meta.yaml | 21 |
| Savu/savu/test/travis/plugin_tests/loader_tests/savu_nexus_loader_test.py | 20 |
| Savu/savu/plugins/ptychography/ptypy_batch.py | 20 |
| Savu/install/2_0_install/conda-recipes/h5py/meta.yaml | 20 |
| Savu/install/2_0_install/conda-recipes/astra/meta.yaml | 20 |
| Savu/savu/test/travis/plugin_tests/loader_tests/i18_stxm_loader_test.py | 19 |
| Savu/savu/test/travis/plugin_tests/loader_tests/i18_fluo_loader_test.py | 19 |
| Savu/install/2_0_install/conda-recipes/xraylib/meta.yaml | 19 |
| Savu/install/2_0_install/conda-recipes/hdf5/meta.yaml | 19 |
| Savu/install/2_0_install/conda-recipes/__init__.py | 19 |
| Savu/install/2_0_install/__init__.py | 19 |
| Savu/install/1_2_install/conda-recipes/xraylib/meta.yaml | 19 |
| Savu/install/1_2_install/conda-recipes/savu_test/meta.yaml | 19 |
| Savu/install/1_2_install/conda-recipes/savu/meta.yaml | 19 |
| Savu/install/1_2_install/conda-recipes/hdf5/meta.yaml | 19 |
| Savu/install/1_2_install/conda-recipes/hdf5/bld.bat | 19 |
| Savu/install/1_2_install/conda-recipes/h5py/meta.yaml | 19 |
| Savu/install/1_2_install/conda-recipes/h5py/bld.bat | 19 |
| Savu/install/1_2_install/conda-recipes/future_recipes/hdf5/meta.yaml | 19 |
| Savu/install/1_2_install/conda-recipes/future_recipes/h5py/meta.yaml | 19 |
| Savu/install/1_2_install/conda-recipes/astra/meta.yaml | 19 |
| Savu/install/1_2_install/conda-recipes/__init__.py | 19 |
| Savu/install/1_2_install/__init__.py | 19 |
| Savu/savu/test/travis/plugin_tests/filter_tests/pyfai_filtered_test.py | 18 |
| Savu/savu/plugins/savers/__init__.py | 18 |
| Savu/savu/plugins/reconstructions/__init__.py | 18 |
| Savu/savu/plugins/loaders/random_hdf5_loader.py | 18 |
| Savu/savu/plugins/loaders/__init__.py | 18 |
| Savu/savu/plugins/fluo_fitters/__init__.py | 18 |
| Savu/savu/plugins/fitters/__init__.py | 18 |
| Savu/savu/plugins/filters/__init__.py | 18 |
| Savu/scripts/log_evaluation/GraphicalThreadProfiler_multi.py | 17 |
| Savu/savu/plugins/docstring_parser.py | 16 |
| Savu/scripts/dawn_runner/run_savu.py | 15 |
| Savu/scripts/config_generator/mutations.py | 15 |
| Savu/savu/test/jenkins/process_list_tests/mm_processing_template_test.py | 15 |
| Savu/savu/test/jenkins/framework_tests/mm_checkpoint_test.py | 15 |
| Savu/scripts/configurator_tests/savu_config_test.py | 14 |
| Savu/savu/plugins/driver/base_driver.py | 14 |
| Savu/savu/plugins/corrections/distortion_correction.py | 14 |
| Savu/savu/data/transport_data/__init__.py | 14 |
| Savu/savu/data/data_structures/__init__.py | 14 |
| Savu/savu/core/transports/__init__.py | 14 |
| Savu/savu/test/travis/framework_tests/astra_multiple_parameter_test.py | 13 |
| Savu/savu/plugins/loaders/mapping_loaders/i22_loaders/i22_tomo_loader.py | 13 |
| Savu/savu/plugins/loaders/mapping_loaders/i22_loaders/__init__.py | 13 |
| Savu/savu/plugins/loaders/mapping_loaders/i13_loaders/i13_stxm_loader.py | 13 |
| Savu/savu/plugins/loaders/mapping_loaders/i13_loaders/__init__.py | 13 |
| Savu/savu/test/travis/plugin_tests/loader_tests/i18_mm_loader_test.py | 12 |
| Savu/savu/plugins/loaders/full_field_loaders/multi_nxtomo_loader.py | 12 |
| Savu/savu/plugins/filters/image_interpolation.py | 12 |
| Savu/install/2_1_install/conda-recipes/xraylib/meta.yaml | 12 |
| Savu/install/2_1_install/conda-recipes/hdf5/meta.yaml | 12 |
| Savu/install/2_1_install/conda-recipes/h5py/meta.yaml | 12 |
| Savu/install/2_1_install/conda-recipes/astra/meta.yaml | 12 |
| Savu/savu/plugins/driver/all_cpus_plugin.py | 11 |
| Savu/savu/test/travis/plugin_tests/filter_tests/pymca_test.py | 10 |
| Savu/savu/test/travis/plugin_tests/filter_tests/pyfai_test.py | 10 |
| Savu/savu/test/travis/plugin_tests/filter_tests/pyfai_separate_test.py | 10 |
| Savu/savu/test/jenkins/process_list_tests/simple_fit_recon_test.py | 10 |
| Savu/savu/test/jenkins/plugin_tests/filter_tests/pca_test.py | 10 |